IL_9ED0_062

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMU)G*CC

Length

5 nucleotides

Bulged bases

9ED0|1|2|OMU|1326

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_062 not in the Motif Atlas

Geometric match to IL_8CRE_451

Geometric discrepancy: 0.077

The information below is about IL_8CRE_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9ED0|1|2|G|1325
9ED0|1|2|OMU|1326
9ED0|1|2|G|1327
*
9ED0|1|2|C|1502
9ED0|1|2|C|1503

Current chains

Chain 2

rRNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain d

Small ribosomal subunit protein uS14