IL_9ED0_066

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

9ED0|1|2|A|1489

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_066 not in the Motif Atlas

Geometric match to IL_8CRE_455

Geometric discrepancy: 0.104

The information below is about IL_8CRE_455

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9ED0|1|2|4AC|1337
9ED0|1|2|G|1338
*
9ED0|1|2|C|1488
9ED0|1|2|A|1489
9ED0|1|2|OMG|1490

Current chains

Chain 2

rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS5

Chain D

Small ribosomal subunit protein uS3

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14

Chain h

La-related protein 1