IL_9ED0_076

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9ED0|1|2|A|1580, 9ED0|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|G|1550
9ED0|1|2|U|1551
9ED0|1|2|G|1552
9ED0|1|2|C|1553
9ED0|1|2|C|1554
9ED0|1|2|U|1555
9ED0|1|2|A|1556
9ED0|1|2|C|1557
9ED0|1|2|C|1558
*
9ED0|1|2|G|1577
9ED0|1|2|U|1578
9ED0|1|2|A|1579
9ED0|1|2|A|1580
9ED0|1|2|C|1581
9ED0|1|2|C|1582

Current chains

Chain 2

rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14