IL_9ED0_089

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_089 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.1083

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9ED0|1|2|C|1742
9ED0|1|2|G|1743
9ED0|1|2|G|1744
9ED0|1|2|A|1745
9ED0|1|2|U|1746
*
9ED0|1|2|A|1788
9ED0|1|2|G|1789
9ED0|1|2|A|1790
9ED0|1|2|A|1791
9ED0|1|2|G|1792

Current chains

Chain 2

rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8