IL_9EHO_021

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGG*CCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_021 not in the Motif Atlas

Geometric match to IL_8BH9_001

Geometric discrepancy: 0.1877

The information below is about IL_8BH9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9EHO|1|5|G|469
9EHO|1|5|A|470
9EHO|1|5|G|471
9EHO|1|5|G|472
*
9EHO|1|5|C|622
9EHO|1|5|C|623
9EHO|1|5|C|624
9EHO|1|5|U|625

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein eL6

Chain r

Large ribosomal subunit protein eL28