IL_9EHO_043

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_043 not in the Motif Atlas

Homologous match to IL_9AXU_030

Geometric discrepancy: 0.2017

The information below is about IL_9AXU_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9EHO|1|5|G|1439
9EHO|1|5|C|1440
9EHO|1|5|C|1441
9EHO|1|5|U|1442
*
9EHO|1|5|A|1458
9EHO|1|5|U|1459
9EHO|1|5|C|1460

Current chains

Chain 5

28S rRNA

Nearby chains

Chain j

Ribosomal protein L37