IL_9EHO_052
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACUG*CUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_052 not in the Motif Atlas
- Homologous match to IL_9PN5_040
- Geometric discrepancy: 0.0932
- The information below is about IL_9PN5_040
- Detailed Annotation
- Tandem non-canonical cWW pairs; U in syn
- Broad Annotation
- Tandem non-canonical cWW pairs; U in syn
- Motif group
- IL_71194.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9EHO|1|5|A|1588
9EHO|1|5|C|1589
9EHO|1|5|U|1590
9EHO|1|5|G|1591
*
9EHO|1|5|C|1624
9EHO|1|5|U|1625
9EHO|1|5|C|1626
9EHO|1|5|U|1627
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
- Chain I
- Large ribosomal subunit protein uL16
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