IL_9EHO_058
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- 9EHO|1|5|U|1972
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_058 not in the Motif Atlas
- Homologous match to IL_9H3G_054
- Geometric discrepancy: 0.1127
- The information below is about IL_9H3G_054
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.3
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9EHO|1|5|C|1808
9EHO|1|5|U|1809
9EHO|1|5|A|1810
9EHO|1|5|A|1811
9EHO|1|5|G|1812
*
9EHO|1|5|C|1969
9EHO|1|5|G|1970
9EHO|1|5|A|1971
9EHO|1|5|U|1972
9EHO|1|5|G|1973
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7 isoform X1
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain e
- 60S ribosomal protein L32
- Chain f
- Large ribosomal subunit protein eL33
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