IL_9EHO_061
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCCAUUAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9EHO|1|5|U|1832, 9EHO|1|5|U|1833, 9EHO|1|5|G|1957, 9EHO|1|5|A|1959
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_061 not in the Motif Atlas
- Homologous match to IL_9H3G_057
- Geometric discrepancy: 0.2386
- The information below is about IL_9H3G_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.3
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|5|C|1828
9EHO|1|5|C|1829
9EHO|1|5|C|1830
9EHO|1|5|A|1831
9EHO|1|5|U|1832
9EHO|1|5|U|1833
9EHO|1|5|A|1834
9EHO|1|5|G|1835
*
9EHO|1|5|C|1955
9EHO|1|5|U|1956
9EHO|1|5|G|1957
9EHO|1|5|G|1958
9EHO|1|5|A|1959
9EHO|1|5|G|1960
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- Large ribosomal subunit protein uL6
- Chain M
- Large ribosomal subunit protein eL14
- Chain O
- Large ribosomal subunit protein uL13
- Chain S
- 60S ribosomal protein L18a
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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