Motif IL_39054.4 Version IL_39054.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-8 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_057 | 9H3G | 0.1089 | 5 | A | LSU rRNA | C | 1196 | U | 1197 | A | 1198 | A | 1199 | A | 1203 | G | 1204 | * | C | 1324 | U | 1325 | A | 1327 | G | 1329 | cWW | tWW | tWW | tWH | cWW |
| 2 | IL_8OI5_054 | 8OI5 | 0.0665 | 4 | 1 | LSU rRNA | C | 1183 | U | 1184 | C | 1185 | A | 1186 | A | 1189 | G | 1190 | * | C | 1310 | U | 1311 | A | 1313 | G | 1315 | cWW | tWW | tWW | ncWB | cWW |
| 3 | IL_9SUM_049 | 9SUM | 0.0426 | 4 | A | LSU rRNA | C | 1134 | U | 1135 | C | 1136 | A | 1137 | A | 1140 | G | 1141 | * | C | 1261 | U | 1262 | A | 1264 | G | 1266 | cWW | tWW | tWW | ntWH | cWW |
| 4 | IL_9PN5_049 | 9PN5 | 0.0000 | 4 | A1 | LSU rRNA | C | 1187 | U | 1188 | C | 1189 | A | 1190 | A | 1193 | G | 1194 | * | C | 1314 | U | 1315 | A | 1317 | G | 1319 | cWW | tWW | tWW | ntWH | cWW |
| 5 | IL_9AXU_048 | 9AXU | 0.0704 | 4 | 2 | LSU rRNA | C | 1218 | U | 1219 | C | 1220 | A | 1221 | A | 1224 | G | 1225 | * | C | 1345 | U | 1346 | A | 1348 | G | 1350 | cWW | tWW | tWW | ntWH | cWW |
| 6 | IL_8GLP_079 | 8GLP | 0.2174 | 4 | L5 | LSU rRNA | C | 1926 | U | 1927 | C | 1928 | A | 1929 | A | 1932 | G | 1933 | * | C | 2053 | U | 2054 | G | 2056 | G | 2058 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAUCAG*CUCAAG | 3 |
| CUAACCUAG*CUUAAG | 1 |
| CUCAUCAG*CUUAAG | 1 |
| CUCAUCAG*CUGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCA*UCAA | 3 |
| UAACCUA*UUAA | 1 |
| UCAUCA*UUAA | 1 |
| UCAUCA*UGGA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Heat map statistics
- Min 0.04 | Avg 0.11 | Max 0.26
Coloring options: