IL_9EHO_069
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_069 not in the Motif Atlas
- Homologous match to IL_9H3G_064
- Geometric discrepancy: 0.0816
- The information below is about IL_9H3G_064
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9EHO|1|5|G|2115
9EHO|1|5|U|2116
9EHO|1|5|A|2117
9EHO|1|5|G|2118
9EHO|1|5|U|2119
9EHO|1|5|A|2120
9EHO|1|5|G|2121
*
9EHO|1|5|C|3669
9EHO|1|5|G|3670
9EHO|1|5|A|3671
9EHO|1|5|A|3672
9EHO|1|5|A|3673
9EHO|1|5|C|3674
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain P
- Large ribosomal subunit protein uL22
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