IL_9H3G_064

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9H3G|1|A|G|1453
9H3G|1|A|U|1454
9H3G|1|A|A|1455
9H3G|1|A|G|1456
9H3G|1|A|U|1457
9H3G|1|A|A2M|1458
9H3G|1|A|OMG|1459
*
9H3G|1|A|C|2352
9H3G|1|A|G|2353
9H3G|1|A|A|2354
9H3G|1|A|A|2355
9H3G|1|A|A|2356
9H3G|1|A|C|2357

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain BM

Large ribosomal subunit protein uL22z

Chain BT

Large ribosomal subunit protein uL4z