IL_9EHO_085
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 9EHO|1|5|G|3650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_085 not in the Motif Atlas
- Geometric match to IL_8GLP_305
- Geometric discrepancy: 0.0699
- The information below is about IL_8GLP_305
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9EHO|1|5|G|2699
9EHO|1|5|G|2700
9EHO|1|5|A|2701
9EHO|1|5|A|2702
9EHO|1|5|G|2703
9EHO|1|5|U|2704
9EHO|1|5|C|2705
9EHO|1|5|G|2706
9EHO|1|5|G|2707
*
9EHO|1|5|C|3648
9EHO|1|5|U|3649
9EHO|1|5|G|3650
9EHO|1|5|U|3651
9EHO|1|5|C|3652
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- Large ribosomal subunit protein uL14
Coloring options: