IL_9EHO_091
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAGCC*GCACAGACG
- Length
- 16 nucleotides
- Bulged bases
- 9EHO|1|5|A|3474, 9EHO|1|5|C|3490, 9EHO|1|5|C|3494
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_091 not in the Motif Atlas
- Geometric match to IL_4V9F_065
- Geometric discrepancy: 0.1709
- The information below is about IL_4V9F_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|5|C|3471
9EHO|1|5|G|3472
9EHO|1|5|U|3473
9EHO|1|5|A|3474
9EHO|1|5|G|3475
9EHO|1|5|C|3476
9EHO|1|5|C|3477
*
9EHO|1|5|G|3487
9EHO|1|5|C|3488
9EHO|1|5|A|3489
9EHO|1|5|C|3490
9EHO|1|5|A|3491
9EHO|1|5|G|3492
9EHO|1|5|A|3493
9EHO|1|5|C|3494
9EHO|1|5|G|3495
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Large ribosomal subunit protein uL2
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain p
- Large ribosomal subunit protein eL43
Coloring options: