IL_9EHO_094
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_094 not in the Motif Atlas
- Homologous match to IL_9H3G_097
- Geometric discrepancy: 0.1853
- The information below is about IL_9H3G_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.3
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|5|U|3526
9EHO|1|5|C|3527
9EHO|1|5|A|3528
9EHO|1|5|A|3529
9EHO|1|5|A|3530
9EHO|1|5|G|3531
9EHO|1|5|U|3532
*
9EHO|1|5|A|3543
9EHO|1|5|A|3544
9EHO|1|5|C|3545
9EHO|1|5|C|3546
9EHO|1|5|A|3547
9EHO|1|5|A|3548
9EHO|1|5|G|3549
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- Large ribosomal subunit protein uL2
- Chain i
- Large ribosomal subunit protein eL36
- Chain o
- Large ribosomal subunit protein eL42
Coloring options: