IL_9EHO_094

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|U|3526
9EHO|1|5|C|3527
9EHO|1|5|A|3528
9EHO|1|5|A|3529
9EHO|1|5|A|3530
9EHO|1|5|G|3531
9EHO|1|5|U|3532
*
9EHO|1|5|A|3543
9EHO|1|5|A|3544
9EHO|1|5|C|3545
9EHO|1|5|C|3546
9EHO|1|5|A|3547
9EHO|1|5|A|3548
9EHO|1|5|G|3549

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

Large ribosomal subunit protein uL2

Chain i

Large ribosomal subunit protein eL36

Chain o

Large ribosomal subunit protein eL42