IL_9EHO_096
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9EHO|1|5|A|3596, 9EHO|1|5|C|3602, 9EHO|1|5|C|3621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_096 not in the Motif Atlas
- Homologous match to IL_9PN5_087
- Geometric discrepancy: 0.0857
- The information below is about IL_9PN5_087
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
9EHO|1|5|C|3592
9EHO|1|5|C|3593
9EHO|1|5|A|3594
9EHO|1|5|A|3595
9EHO|1|5|A|3596
9EHO|1|5|U|3597
9EHO|1|5|G|3598
9EHO|1|5|C|3599
9EHO|1|5|C|3600
9EHO|1|5|U|3601
9EHO|1|5|C|3602
9EHO|1|5|G|3603
*
9EHO|1|5|C|3619
9EHO|1|5|G|3620
9EHO|1|5|C|3621
9EHO|1|5|G|3622
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- eS32
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