IL_9EHO_099

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UAUC

Length

7 nucleotides

Bulged bases

9EHO|1|5|A|3712, 9EHO|1|5|U|4524

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_099 not in the Motif Atlas

Homologous match to IL_9AXU_086

Geometric discrepancy: 0.1286

The information below is about IL_9AXU_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9EHO|1|5|G|3711
9EHO|1|5|A|3712
9EHO|1|5|A|3713
*
9EHO|1|5|U|4522
9EHO|1|5|A|4523
9EHO|1|5|U|4524
9EHO|1|5|C|4525

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22