IL_9EHO_111

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_111 not in the Motif Atlas

Homologous match to IL_9H3G_115

Geometric discrepancy: 0.4269

The information below is about IL_9H3G_115

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9EHO|1|5|C|4302
9EHO|1|5|C|4303
9EHO|1|5|G|4304
*
9EHO|1|5|C|4329
9EHO|1|5|G|4330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein uL15/eL18 domain-containing protein

Chain a

Large ribosomal subunit protein uL15

Chain o

Large ribosomal subunit protein eL42