IL_9EHO_114
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- 9EHO|1|5|U|4401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_114 not in the Motif Atlas
- Homologous match to IL_9PN5_100
- Geometric discrepancy: 0.0931
- The information below is about IL_9PN5_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36931.4
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 25
Unit IDs
9EHO|1|5|G|4369
9EHO|1|5|U|4370
9EHO|1|5|G|4371
*
9EHO|1|5|U|4399
9EHO|1|5|U|4400
9EHO|1|5|U|4401
9EHO|1|5|U|4402
9EHO|1|5|U|4403
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain B
- 60S ribosomal protein L3
- Chain I
- Large ribosomal subunit protein uL16
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