IL_9EHO_127
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUGCG*CCAGG
- Length
- 11 nucleotides
- Bulged bases
- 9EHO|1|5|U|4766, 9EHO|1|5|C|4768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_127 not in the Motif Atlas
- Homologous match to IL_9PN5_114
- Geometric discrepancy: 0.2495
- The information below is about IL_9PN5_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43276.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|5|U|4764
9EHO|1|5|U|4765
9EHO|1|5|U|4766
9EHO|1|5|G|4767
9EHO|1|5|C|4768
9EHO|1|5|G|4769
*
9EHO|1|5|C|4794
9EHO|1|5|C|4795
9EHO|1|5|A|4796
9EHO|1|5|G|4797
9EHO|1|5|G|4798
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain W
- Large ribosomal subunit protein eL24
- Chain d
- Large ribosomal subunit protein eL31
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