IL_9EHO_140
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_140 not in the Motif Atlas
- Geometric match to IL_8QYX_166
- Geometric discrepancy: 0.093
- The information below is about IL_8QYX_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.2
- Basepair signature
- cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|7|G|21
9EHO|1|7|A|22
9EHO|1|7|A|23
9EHO|1|7|A|24
9EHO|1|7|G|25
9EHO|1|7|C|26
9EHO|1|7|A|27
*
9EHO|1|7|U|52
9EHO|1|7|U|53
9EHO|1|7|A|54
9EHO|1|7|A|55
9EHO|1|7|G|56
9EHO|1|7|C|57
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
- Chain J
- 60S ribosomal protein L11
Coloring options: