Motif IL_41504.3 Version IL_41504.3 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 6-9 | 6-12 | 7-8 | 7-11 | 8-10 | 9-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9E6Q_106 | 9E6Q | 0.6828 | 0 | 2 | 5S rRNA | U | 27 | G | 28 | C | 29 | U | 30 | A | 31 | C | 32 | A | 33 | * | U | 58 | U | 59 | A | 60 | A | 61 | G | 62 | G | 63 | cWW | tSW | cWW | cSW | cWW | ncSW | ncSH | ncSH | |
| 2 | IL_8QYX_166 | 8QYX | 0.0949 | 0 | Minor groove platform related (H) | B2 | 5S rRNA | G | 21 | A | 22 | A | 23 | C | 24 | G | 25 | C | 26 | G | 27 | * | C | 52 | U | 53 | A | 54 | A | 55 | G | 56 | C | 57 | cWW | cWW | ncSW | cWW | cSW | cSH | ncSH | |
| 3 | IL_9SUM_130 | 9SUM | 0.0861 | 0 | B | 5S rRNA | G | 22 | A | 23 | A | 24 | A | 25 | G | 26 | C | 27 | A | 28 | * | U | 54 | U | 55 | A | 56 | A | 57 | G | 58 | C | 59 | cWW | cWW | cSW | cWW | cSW | ncSH | ncSH | ||
| 4 | IL_8OI5_135 | 8OI5 | 0.0700 | 0 | Minor groove platform related (H) | 3 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | ncSW | cWW | ncSW | ncSH | ncSH | |
| 5 | IL_9PN5_134 | 9PN5 | 0.0000 | 0 | A3 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | G | 25 | C | 26 | A | 27 | * | U | 53 | U | 54 | A | 55 | A | 56 | G | 57 | C | 58 | cWW | cWW | ncSW | cWW | ncSW | ncSH | ncSH | ||
| 6 | IL_9AXU_126 | 9AXU | 0.1054 | 0 | Minor groove platform related (H) | 3 | 5S rRNA | G | 21 | A | 22 | A | 23 | A | 24 | A | 25 | C | 26 | A | 27 | * | U | 52 | U | 53 | A | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWW | ncSW | cWW | cSW | ncSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAGCA*UUAAGC | 3 |
| UGCUACA*UUAAGG | 1 |
| GAACGCG*CUAAGC | 1 |
| GAAAACA*UUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGC*UAAG | 3 |
| GCUAC*UAAG | 1 |
| AACGC*UAAG | 1 |
| AAAAC*UAAG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform related (H) (3)
- (3)
- Basepair signature
- cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.25 | Max 0.69
Coloring options: