IL_9EHO_156

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCG*CCCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_156 not in the Motif Atlas

Geometric match to IL_3LOA_001

Geometric discrepancy: 0.3019

The information below is about IL_3LOA_001

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_60988.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

9EHO|1|AA|C|118
9EHO|1|AA|C|119
9EHO|1|AA|U|120
9EHO|1|AA|C|121
9EHO|1|AA|G|122
*
9EHO|1|AA|C|589
9EHO|1|AA|C|590
9EHO|1|AA|C|591
9EHO|1|AA|G|592

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain JJ

40S ribosomal protein S8