IL_9EHO_160
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUCAA*UGGCAACG
- Length
- 14 nucleotides
- Bulged bases
- 9EHO|1|AA|U|606, 9EHO|1|AA|C|644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_160 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.0855
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9EHO|1|AA|U|604
9EHO|1|AA|A|605
9EHO|1|AA|U|606
9EHO|1|AA|C|607
9EHO|1|AA|A|608
9EHO|1|AA|A|609
*
9EHO|1|AA|U|641
9EHO|1|AA|G|642
9EHO|1|AA|G|643
9EHO|1|AA|C|644
9EHO|1|AA|A|645
9EHO|1|AA|A|646
9EHO|1|AA|C|647
9EHO|1|AA|G|648
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain JJ
- 40S ribosomal protein S8
- Chain MM
- 40S ribosomal protein S11
- Chain YY
- Small ribosomal subunit protein uS12
Coloring options: