IL_9EHO_161

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUCGA*UG

Length

8 nucleotides

Bulged bases

9EHO|1|AA|U|613, 9EHO|1|AA|C|614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_161 not in the Motif Atlas

Homologous match to IL_9PN5_160

Geometric discrepancy: 0.4325

The information below is about IL_9PN5_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9EHO|1|AA|U|611
9EHO|1|AA|G|612
9EHO|1|AA|U|613
9EHO|1|AA|C|614
9EHO|1|AA|G|615
9EHO|1|AA|A|616
*
9EHO|1|AA|U|638
9EHO|1|AA|G|639

Current chains

Chain AA

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain JJ

40S ribosomal protein S8

Chain MM

40S ribosomal protein S11