IL_9EHO_164

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

9EHO|1|AA|U|673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_164 not in the Motif Atlas

Homologous match to IL_9PN5_161

Geometric discrepancy: 0.1766

The information below is about IL_9PN5_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9EHO|1|AA|G|656
9EHO|1|AA|G|657
9EHO|1|AA|G|658
*
9EHO|1|AA|C|669
9EHO|1|AA|G|670
9EHO|1|AA|A|671
9EHO|1|AA|U|672
9EHO|1|AA|U|673
9EHO|1|AA|C|674

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain KK

Small ribosomal subunit protein uS4

Chain YY

Small ribosomal subunit protein uS12