IL_9EHO_174
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9EHO|1|AA|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_174 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.1282
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9EHO|1|AA|G|856
9EHO|1|AA|U|857
9EHO|1|AA|G|858
9EHO|1|AA|C|859
9EHO|1|AA|C|860
9EHO|1|AA|A|861
9EHO|1|AA|G|862
*
9EHO|1|AA|C|869
9EHO|1|AA|G|870
9EHO|1|AA|G|871
9EHO|1|AA|U|872
9EHO|1|AA|A|873
9EHO|1|AA|A|874
9EHO|1|AA|U|875
9EHO|1|AA|U|876
9EHO|1|AA|C|877
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 1
- RNA (5'-R(P*AP*CP*CP*AP*AP*AP*AP*AP*CP*C)-3')
- Chain 2
- Transfer RNA; tRNA
- Chain EE
- 40S ribosomal protein S3
- Chain YY
- Small ribosomal subunit protein uS12
- Chain ff
- eS30
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