IL_9EHO_176

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_176 not in the Motif Atlas

Homologous match to IL_9PN5_176

Geometric discrepancy: 0.0906

The information below is about IL_9PN5_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9EHO|1|AA|C|921
9EHO|1|AA|G|922
9EHO|1|AA|U|923
9EHO|1|AA|A|924
9EHO|1|AA|G|925
*
9EHO|1|AA|U|1643
9EHO|1|AA|C|1644
9EHO|1|AA|A|1645
9EHO|1|AA|A|1646
9EHO|1|AA|G|1647

Current chains

Chain AA

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain MM

40S ribosomal protein S11

Chain OO

Small ribosomal subunit protein uS15

Chain XX

40S ribosomal protein S15a

Chain YY

Small ribosomal subunit protein uS12