IL_9EHO_183

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAG*CUUGGAUC

Length

13 nucleotides

Bulged bases

9EHO|1|AA|G|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|G|1570
9EHO|1|AA|U|1571
9EHO|1|AA|U|1572
9EHO|1|AA|A|1573
9EHO|1|AA|G|1574
*
9EHO|1|AA|C|1585
9EHO|1|AA|U|1586
9EHO|1|AA|U|1587
9EHO|1|AA|G|1588
9EHO|1|AA|G|1589
9EHO|1|AA|A|1590
9EHO|1|AA|U|1591
9EHO|1|AA|C|1592

Current chains

Chain AA

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

Small ribosomal subunit protein eS1

Chain PP

40S ribosomal protein S14a