IL_9EHO_183
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAG*CUUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9EHO|1|AA|G|1588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_183 not in the Motif Atlas
- Homologous match to IL_9H3G_202
- Geometric discrepancy: 0.1291
- The information below is about IL_9H3G_202
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9EHO|1|AA|G|1570
9EHO|1|AA|U|1571
9EHO|1|AA|U|1572
9EHO|1|AA|A|1573
9EHO|1|AA|G|1574
*
9EHO|1|AA|C|1585
9EHO|1|AA|U|1586
9EHO|1|AA|U|1587
9EHO|1|AA|G|1588
9EHO|1|AA|G|1589
9EHO|1|AA|A|1590
9EHO|1|AA|U|1591
9EHO|1|AA|C|1592
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain CC
- Small ribosomal subunit protein eS1
- Chain PP
- 40S ribosomal protein S14a
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