IL_9EHO_199
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9EHO|1|AA|U|2398, 9EHO|1|AA|G|2401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_199 not in the Motif Atlas
- Homologous match to IL_9H3G_221
- Geometric discrepancy: 0.1188
- The information below is about IL_9H3G_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09439.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9EHO|1|AA|U|1950
9EHO|1|AA|G|1951
9EHO|1|AA|G|1952
*
9EHO|1|AA|U|2396
9EHO|1|AA|C|2397
9EHO|1|AA|U|2398
9EHO|1|AA|G|2399
9EHO|1|AA|U|2400
9EHO|1|AA|G|2401
9EHO|1|AA|A|2402
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S3
- Chain LL
- Plectin/eS10 N-terminal domain-containing protein
- Chain VV
- Small ribosomal subunit protein uS10
- Chain ee
- Small ribosomal subunit protein uS14
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