IL_9EHO_202

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_202 not in the Motif Atlas

Homologous match to IL_9PN5_211

Geometric discrepancy: 0.1817

The information below is about IL_9PN5_211

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9EHO|1|AA|C|1980
9EHO|1|AA|U|1981
9EHO|1|AA|G|1982
*
9EHO|1|AA|C|1991
9EHO|1|AA|G|1992

Current chains

Chain AA

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS17