IL_9EHO_205
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGG*CACGAGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_205 not in the Motif Atlas
- Geometric match to IL_9H3G_228
- Geometric discrepancy: 0.227
- The information below is about IL_9H3G_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32376.2
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
9EHO|1|AA|C|2357
9EHO|1|AA|G|2358
9EHO|1|AA|G|2359
9EHO|1|AA|G|2360
*
9EHO|1|AA|C|2374
9EHO|1|AA|A|2375
9EHO|1|AA|C|2376
9EHO|1|AA|G|2377
9EHO|1|AA|A|2378
9EHO|1|AA|G|2379
9EHO|1|AA|G|2380
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain GG
- Ribosomal S5
- Chain RR
- 40S ribosomal protein S16
- Chain SS
- Small ribosomal subunit protein eS17
- Chain hh
- Small ribosomal subunit protein RACK1
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