IL_9EHO_209

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9EHO|1|AA|C|2606, 9EHO|1|AA|A|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_209 not in the Motif Atlas

Homologous match to IL_9PN5_220

Geometric discrepancy: 0.1939

The information below is about IL_9PN5_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9EHO|1|AA|C|2605
9EHO|1|AA|C|2606
9EHO|1|AA|G|2607
*
9EHO|1|AA|C|2766
9EHO|1|AA|A|2767
9EHO|1|AA|A|2768
9EHO|1|AA|G|2769

Current chains

Chain AA

18S rRNA

Nearby chains

Chain 1

RNA (5'-R(P*AP*CP*CP*AP*AP*AP*AP*AP*CP*C)-3')

Chain 3

Transfer RNA; tRNA

Chain bb

40S ribosomal protein S26