IL_9ELY_004

3D structure

PDB id

9ELY (explore in PDB, NAKB, or RNA 3D Hub)

Description

raiA RNA motif (Clostridium acetobutylicum)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ELY_004 not in the Motif Atlas

Geometric match to IL_8CRE_012

Geometric discrepancy: 0.2624

The information below is about IL_8CRE_012

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

9ELY|1|A|A|64
9ELY|1|A|C|65
*
9ELY|1|A|G|69
9ELY|1|A|U|70
9ELY|1|A|U|71

Current chains

Chain A

raiA RNA

Nearby chains