IL_9ELY_010

3D structure

PDB id

9ELY (explore in PDB, NAKB, or RNA 3D Hub)

Description

raiA RNA motif (Clostridium acetobutylicum)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAGAG*CGGGUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ELY_010 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.2072

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9ELY|1|A|U|132
9ELY|1|A|G|133
9ELY|1|A|A|134
9ELY|1|A|G|135
9ELY|1|A|A|136
9ELY|1|A|G|137
*
9ELY|1|A|C|146
9ELY|1|A|G|147
9ELY|1|A|G|148
9ELY|1|A|G|149
9ELY|1|A|U|150
9ELY|1|A|A|151
9ELY|1|A|G|152

Current chains

Chain A

raiA RNA

Nearby chains