IL_9F1B_001

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AGCAU*A(PSU)A(PSU)U

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_001 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2858

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9F1B|1|A2|A|22
9F1B|1|A2|G|23
9F1B|1|A2|C|24
9F1B|1|A2|A|25
9F1B|1|A2|U|26
*
9F1B|1|A2|A|649
9F1B|1|A2|PSU|650
9F1B|1|A2|A|651
9F1B|1|A2|PSU|652
9F1B|1|A2|U|653

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23