IL_9F1B_031

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

9F1B|1|A2|G|601

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_031 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0875

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

9F1B|1|A2|A|600
9F1B|1|A2|G|601
9F1B|1|A2|OMG|602
9F1B|1|A2|G|603
9F1B|1|A2|C|604
9F1B|1|A2|A|605
9F1B|1|A2|A|606
9F1B|1|A2|G|607
*
9F1B|1|A2|C|637
9F1B|1|A2|U|638

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ab

40S ribosomal protein S2

Chain Ai

40S ribosomal protein S9