IL_9F1B_055

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9F1B|1|A2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_055 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1176

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

9F1B|1|A2|G|953
9F1B|1|A2|C|954
9F1B|1|A2|U|955
9F1B|1|A2|A|956
9F1B|1|A2|G|957
*
9F1B|1|A2|C|968
9F1B|1|A2|U|969
9F1B|1|A2|U|970
9F1B|1|A2|G|971
9F1B|1|A2|G|972
9F1B|1|A2|A|973
9F1B|1|A2|C|974
9F1B|1|A2|C|975

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain An

Small ribosomal subunit protein uS11

Chain B5

Large subunit ribosomal RNA; LSU rRNA