IL_9F1B_065

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

9F1B|1|A2|G|1208

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_065 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2025

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9F1B|1|A2|C|1206
9F1B|1|A2|G|1207
9F1B|1|A2|G|1208
9F1B|1|A2|A|1209
*
9F1B|1|A2|U|1692
9F1B|1|A2|PSU|1693
9F1B|1|A2|G|1694

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS26

Chain AH

mRNA

Chain Ab

40S ribosomal protein S2

Chain An

Small ribosomal subunit protein uS11