IL_9F1B_067

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_067 not in the Motif Atlas

Geometric match to IL_4V88_453

Geometric discrepancy: 0.186

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

9F1B|1|A2|G|1223
9F1B|1|A2|A|1224
9F1B|1|A2|G|1225
*
9F1B|1|A2|U|1643
9F1B|1|A2|PSU|1644
9F1B|1|A2|C|1645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

P-site tRNA

Chain Ae

Ribosomal protein S5

Chain Ap

Small ribosomal subunit protein uS9