IL_9F1B_080

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UAA*U(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_080 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2964

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9F1B|1|A2|U|1401
9F1B|1|A2|A|1402
9F1B|1|A2|A|1403
*
9F1B|1|A2|U|1445
9F1B|1|A2|PSU|1446
9F1B|1|A2|A|1447

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein RACK1

Chain Ap

Small ribosomal subunit protein uS9

Chain At

Small ribosomal subunit protein uS10