IL_9F1B_081

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

9F1B|1|A2|C|1404, 9F1B|1|A2|U|1405

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_081 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1513

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9F1B|1|A2|A|1403
9F1B|1|A2|C|1404
9F1B|1|A2|U|1405
9F1B|1|A2|A|1406
*
9F1B|1|A2|U|1442
9F1B|1|A2|OMU|1443
9F1B|1|A2|C|1444
9F1B|1|A2|U|1445

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein RACK1

Chain Ap

Small ribosomal subunit protein uS9

Chain At

Small ribosomal subunit protein uS10