IL_9F1B_111

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9F1B|1|B5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_111 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2785

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9F1B|1|B5|C|118
9F1B|1|B5|G|119
9F1B|1|B5|A|120
9F1B|1|B5|A|121
*
9F1B|1|B5|U|152
9F1B|1|B5|G|153

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15

Chain Bh

60S ribosomal protein L35