3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
CGAA*UG
Length
6 nucleotides
Bulged bases
9F1B|1|B5|G|119
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_111 not in the Motif Atlas
Geometric match to IL_5J7L_268
Geometric discrepancy: 0.2785
The information below is about IL_5J7L_268
Detailed Annotation
Stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_56987.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
3

Unit IDs

9F1B|1|B5|C|118
9F1B|1|B5|G|119
9F1B|1|B5|A|120
9F1B|1|B5|A|121
*
9F1B|1|B5|U|152
9F1B|1|B5|G|153

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BG
60S ribosomal protein L7a
Chain BN
Ribosomal protein L15
Chain Bh
60S ribosomal protein L35

Coloring options:


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