IL_9F1B_186

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGCCCGAUGC*GGG

Length

13 nucleotides

Bulged bases

9F1B|1|B5|G|1858

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_186 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2055

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9F1B|1|B5|C|1850
9F1B|1|B5|G|1851
9F1B|1|B5|C|1852
9F1B|1|B5|C|1853
9F1B|1|B5|C|1854
9F1B|1|B5|G|1855
9F1B|1|B5|A|1856
9F1B|1|B5|U|1857
9F1B|1|B5|G|1858
9F1B|1|B5|C|1859
*
9F1B|1|B5|G|2002
9F1B|1|B5|G|2003
9F1B|1|B5|G|2004

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13

Chain BS

Large ribosomal subunit protein eL20

Chain Bf

60S ribosomal protein L35a