IL_9F1B_224

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9F1B|1|B5|A|3395, 9F1B|1|B5|U|3411, 9F1B|1|B5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_224 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0754

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9F1B|1|B5|C|3392
9F1B|1|B5|G|3393
9F1B|1|B5|A|3394
9F1B|1|B5|A|3395
9F1B|1|B5|G|3396
9F1B|1|B5|G|3397
*
9F1B|1|B5|U|3409
9F1B|1|B5|G|3410
9F1B|1|B5|U|3411
9F1B|1|B5|U|3412
9F1B|1|B5|G|3413
9F1B|1|B5|A|3414
9F1B|1|B5|C|3415
9F1B|1|B5|G|3416

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Large ribosomal subunit protein uL2

Chain Bp

60S ribosomal protein L37a