3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
GCU*G(OMG)U
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_228 not in the Motif Atlas
Geometric match to IL_2ZNI_001
Geometric discrepancy: 0.1299
The information below is about IL_2ZNI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

9F1B|1|B5|G|3437
9F1B|1|B5|C|3438
9F1B|1|B5|U|3439
*
9F1B|1|B5|G|3475
9F1B|1|B5|OMG|3476
9F1B|1|B5|U|3477

Current chains

Chain B5
28S rRNA

Nearby chains

Chain A2
Small subunit ribosomal RNA; SSU rRNA
Chain Aa
40S ribosomal protein S3a
Chain BA
Large ribosomal subunit protein uL2

Coloring options:


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