IL_9F1B_270

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

G(PSU)U*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_270 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1133

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9F1B|1|B5|G|4324
9F1B|1|B5|PSU|4325
9F1B|1|B5|U|4326
*
9F1B|1|B5|A|4469
9F1B|1|B5|A|4470
9F1B|1|B5|C|4471

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3