IL_9F1B_272

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9F1B|1|B5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_272 not in the Motif Atlas

Geometric match to IL_5TBW_114

Geometric discrepancy: 0.2491

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

9F1B|1|B5|C|4328
9F1B|1|B5|C|4329
9F1B|1|B5|A|4330
9F1B|1|B5|U|4331
*
9F1B|1|B5|A|4463
9F1B|1|B5|G|4464
9F1B|1|B5|G|4465
9F1B|1|B5|C|4466
9F1B|1|B5|G|4467

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Large ribosomal subunit protein uL13