IL_9F1B_278

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9F1B|1|B5|A|4454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_278 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2342

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9F1B|1|B5|G|4426
9F1B|1|B5|A|4427
9F1B|1|B5|U|4428
9F1B|1|B5|U|4429
9F1B|1|B5|A|4430
9F1B|1|B5|U|4431
*
9F1B|1|B5|A|4451
9F1B|1|B5|G|4452
9F1B|1|B5|A|4453
9F1B|1|B5|A|4454
9F1B|1|B5|U|4455
9F1B|1|B5|C|4456

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Large ribosomal subunit protein uL13

Chain Bm

Ubiquitin-ribosomal protein eL40 fusion protein