3D structure

PDB id
9F1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
Experimental method
ELECTRON MICROSCOPY
Resolution
3.01 Å

Loop

Sequence
GCGAA(PSU)*AAAC
Length
10 nucleotides
Bulged bases
9F1B|1|B5|G|1680
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1B_334 not in the Motif Atlas
Homologous match to IL_8C3A_043
Geometric discrepancy: 0.1092
The information below is about IL_8C3A_043
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.3
Basepair signature
cWW-cWS-cWW-cWW-R-cSH-tWH-R
Number of instances in this motif group
6

Unit IDs

9F1B|1|B5|G|1678
9F1B|1|B5|C|1679
9F1B|1|B5|G|1680
9F1B|1|B5|A|1681
9F1B|1|B5|A|1682
9F1B|1|B5|PSU|1683
*
9F1B|1|B5|A|1725
9F1B|1|B5|A|1726
9F1B|1|B5|A|1727
9F1B|1|B5|C|1728

Current chains

Chain B5
28S rRNA

Nearby chains

Chain B
Large ribosomal subunit protein uL18
Chain B7
5S ribosomal RNA; 5S rRNA
Chain BI
60S ribosomal protein L10
Chain BT
60S ribosomal protein L21

Coloring options:


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