IL_9F1B_334
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GCGAA(PSU)*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9F1B|1|B5|G|1680
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1B_334 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1092
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
9F1B|1|B5|G|1678
9F1B|1|B5|C|1679
9F1B|1|B5|G|1680
9F1B|1|B5|A|1681
9F1B|1|B5|A|1682
9F1B|1|B5|PSU|1683
*
9F1B|1|B5|A|1725
9F1B|1|B5|A|1726
9F1B|1|B5|A|1727
9F1B|1|B5|C|1728
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein uL18
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BI
- 60S ribosomal protein L10
- Chain BT
- 60S ribosomal protein L21
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